I have not used Orca for a while... on my lunch break I can open it up and mess around with it. I use InstallShield 2015. EDIT - Yeah, I don't know why I did not mention this earlier, but every MSI is going to be different in Orca... I opened a handful of MSI's I have created and each were different.
Are you open to creating a simple script to delete the shortcuts?
What program is it? I could create a transform for you and you can test it if you'd like.
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